adapted to chewie_setup flag --cdb

static/pipelines.tsv

 pipeline	official_name	repository_name	repository_origin_url	main_snakefile	pipeline_py	pipeline_setup_sh	pipeline_wrapper_sh	setup_args_env	setup_args_data
 aquamis	AQUAMIS	AQUAMIS	https://gitlab.com/bfr_bioinformatics/AQUAMIS.git	Snakefile	aquamis.py	scripts/aquamis_setup.sh	scripts/aquamis_wrapper.sh	--mamba --busco	--symlinks_to_ceph --test_data
 bakcharak	BakCharak	bakcharak	https://gitlab.com/bfr_bioinformatics/bakcharak.git	Snakefile	bakcharak.py	scripts/bakcharak_setup.sh	scripts/bakcharak_wrapper.sh	--mamba --amrfinder_update	--symlinks_to_ceph --test_data
-chewiesnake	ChewieSnake	chewieSnake	https://gitlab.com/bfr_bioinformatics/chewieSnake.git	chewieSnake_fromcontigs.smk	chewieSnake.py	scripts/chewieSnake_setup.sh	scripts/chewieSnake_wrapper.sh	--mamba	--dryrun
+chewiesnake	ChewieSnake	chewieSnake	https://gitlab.com/bfr_bioinformatics/chewieSnake.git	chewieSnake_fromcontigs.smk	chewieSnake.py	scripts/chewieSnake_setup.sh	scripts/chewieSnake_wrapper.sh	--mamba	--symlinks_to_ceph
 snippysnake	snippySnake	snippySnake	https://gitlab.com/bfr_bioinformatics/snippySnake.git	snippySnake.smk	snippySnake.py	scripts/snippySnake_setup.sh	scripts/snippySnake_wrapper.sh	--mamba	--test_data --sra_toolkit
 milonga	MiLongA	milonga	https://gitlab.com/bfr_bioinformatics/milonga.git	pipeline.smk	milonga.py	scripts/milonga_setup.sh	scripts/milonga_wrapper.sh	--mamba	--symlinks_to_ceph --test_data