add mamba install command

scripts/deploy_all_pipelines.sh

@@ -160,8 +160,8 @@ branch:|$branch
   [[ $dryrun == false && $do_git_pull == true ]] && ( git -C $git_parent_dir clone --branch "$branch" "${repository_origin_urls[$pipeline]}" || die "Could not clone repository: $pipeline" )
   [[ ! -d $pipeline_dir ]] && die "Directory was not created: $pipeline_dir"
 
-  ## check status
-  "$pipeline_dir"/"${pipeline_setup_sh[$pipeline]}" --auto --status
+  ## install mamba environment
+  "$pipeline_dir"/"${pipeline_setup_sh[$pipeline]}" --auto --mamba
 
   return 0
 }