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Created with Raphaël 2.2.04Apr18Nov1615141312118remove realpath option -P, --physical as it is the default and NOT supported by other OS versionsmastermasteradapted to chewie_setup flag --cdbcheck presence of mail commandminormoved pipeline_wrapper_sh to new function; new flags --deployment and --analysisadded interactive_query and pipeline_wrapper_shfix messageremoved symlink, added hardcopymoved symlinking to ceph function to pipeline setup scriptsadded missing pathsrename repo to toolbox and directory symlinks to code_harmonizationadded symlink-to-cephfs logic with tablefixed conditional run logicadd mamba install commandadded column with full install argsupdate argsadded full_install_args dummyadded deploy_all_pipelines.shremoved --allow-ragged-csv-input; pipeline_table_column2array creates an associative arrayadded LICENSE and updated README with usageadded version_file, license_file, main_snakefileadded pipeline_runs_tsvcreate symlink_dirupdatefirst draftinit